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What type of database is PDB?

The Protein Data Bank (PDB) is a database for the three-dimensional structural data of large biological molecules, such as proteins and nucleic acids.


Is PDB a secondary database?

PDB (Berman et al., 2000) is the most comprehensive repository of structure data for biological macromolecules. The repository contains the primary structure and secondary structure information along with the atomic coordinates of a constituent atoms of biomolecule. It also contains corresponding experimental data.

What is PDB in database?

A pluggable database (PDB) is a portable collection of schemas, schema objects, and nonschema objects that appears to an Oracle Net client as a non-CDB. PDBs can be plugged into to CDBs. A CDB can contain multiple PDBs. Each PDB appears on the network as a separate database.

Why is PDB a primary database?

All the data collected from depositors by the PDB are considered primary data. Primary data contain, in addition to the coordinates, general information required for all deposited structures and information specific to the method of structure determination.

What is PDB and CDB database?

A CDB includes zero, one, or many customer-created pluggable databases (PDBs). A PDB is a portable collection of schemas, schema objects, and non-schema objects that appears to an Oracle Net client as a non-CDB . All Oracle databases before Oracle Database 12c were non-CDBs.

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